Package: diseasystore 0.3.3.9000

Rasmus Skytte Randløv

diseasystore: Feature Stores for the 'diseasy' Framework

Simple feature stores and tools for creating personalised feature stores. 'diseasystore' powers feature stores which can automatically link and aggregate features to a given stratification level. These feature stores are automatically time-versioned (powered by the 'SCDB' package) and allows you to easily and dynamically compute features as part of your continuous integration.

Authors:Rasmus Skytte Randløv [aut, cre], Kaare Græsbøll [rev], Kasper Schou Telkamp [rev], Lasse Engbo Christiansen [rev], Marcus Munch Grünewald [rev], Sofia Myrup Otero [rev], Statens Serum Institut, SSI [cph, fnd]

diseasystore_0.3.3.9000.tar.gz
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diseasystore_0.3.3.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
diseasystore/json (API)

# Install 'diseasystore' in R:
install.packages('diseasystore', repos = c('https://ssi-dk.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ssi-dk/diseasystore/issues

Pkgdown/docs site:https://ssi-dk.github.io

On CRAN:

Conda:

7.21 score 4 stars 21 scripts 403 downloads 22 exports 47 dependencies

Last updated from:a6d0568e77. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK285
source / vignettesOK243
linux-release-x86_64OK259
macos-release-arm64OK229
macos-oldrel-arm64OK269
windows-develOK241
windows-releaseOK227
windows-oldrelOK267
wasm-releaseOK176

Exports:%.%add_yearsage_labelsage_on_dateavailable_diseasystoresdiseasyoptiondiseasystore_existsDiseasystoreBaseDiseasystoreEcdcRespiratoryVirusesDiseasystoreGoogleCovid19DiseasystoreSimulistdrop_diseasystoreFeatureHandlerget_diseasystorekey_join_countkey_join_maxkey_join_minkey_join_sumsource_conn_githubsource_conn_pathtest_diseasystoreto_diseasystore_case

Dependencies:askpassassertthatbackportsbitbit64blobcheckmateclicliprcpp11crayoncurlDBIdbplyrdplyrgenericsgluehmsISOweekjsonlitelifecyclelubridatemagrittropensslparallellypillarpkgcondpkgconfigprettyunitsprogresspurrrR6readrrlangSCDBstringistringrsystibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithr

Extending diseasystore
The diseasy data model | A bitemporal data model | valid_from and valid_until | from_ts and until_ts | Automatic data-coupling | Features | Observables | Stratifications | Naming convention | Creating FeatureHandlers | Computing features | Retrieving features | Aggregators | Putting it all together | Creating a diseasystore | ds_map | Key join filter | Testing your diseasystore | Exposing the period of data availability | Limiting support for some database backends
Rendered fromextending-diseasystore.Rmdusingknitr::rmarkdown

Last update: 2026-01-05
Started: 2023-12-13

Extending diseasystore - simulist example
Introduction | Feature identification | Feature implementation | The birth FeatureHandler | The sex FeatureHandler | The age FeatureHandler | The n_positive FeatureHandler | The n_hospital FeatureHandler | The n_admission FeatureHandler | The final product | Configuring the diseasystore | Retrieving features | Combining features | No stratification | Stratifying by a custom age group | Stratifying by generation
Rendered fromextending-diseasystore-example.Rmdusingknitr::rmarkdown

Last update: 2026-01-05
Started: 2024-11-05

diseasystore: Google Health COVID-19 Open Data
Rendered fromdiseasystore-google-covid-19.Rmdusingknitr::rmarkdown

Last update: 2025-12-03
Started: 2023-12-13

diseasystore: Benchmarks
Rendered frombenchmarks.Rmdusingknitr::rmarkdown

Last update: 2025-02-28
Started: 2024-10-28

diseasystore: ECDC Respiratory Viruses Weekly
Rendered fromdiseasystore-ecdc-respiratory-viruses.Rmdusingknitr::rmarkdown

Last update: 2025-02-19
Started: 2024-03-19

diseasystore: quick start guide
Available diseasystores | Using a diseasystore | Dynamically expanded | Time versioned | Automatic aggregation | Dropping computed features | diseasystore options
Rendered fromdiseasystore.Rmdusingknitr::rmarkdown

Last update: 2025-02-19
Started: 2024-01-05