Package: aedseo
Title: Automated and Early Detection of Seasonal Epidemic Onset and
        Burden Levels
Version: 1.1.0.9000
Authors@R: c(
    person("Sofia", "Myrup Otero", , "smot@ssi.dk", role = c("aut"),
            comment = c(ORCID = "0009-0006-4953-614X")),
    person("Kasper", "Schou Telkamp", ,"kasper.telkamp@gmail.com", role = c("aut"),
            comment = c(ORCID = "0009-0001-5126-0190")),
    person("Lasse Engbo", "Christiansen", , "lsec@ssi.dk", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-5019-1931")),
    person("Rasmus Skytte", "Randl\u00F8v", , "rske@ssi.dk", role = c("rev"),
            comment = c(ORCID = "0000-0002-5860-3838")),
    person("Statens Serum Institut, SSI", role = c("cph", "fnd"))
    )
Description: A powerful tool for automating the early detection of
        seasonal epidemic onsets in time series data. It offers the
        ability to estimate growth rates across consecutive time
        intervals, calculate the sum of cases (SoC) within those
        intervals, and estimate seasonal onsets within user defined
        seasons. With use of a disease-specific threshold it also
        offers the possibility to estimate seasonal onset of epidemics.
        Additionally it offers the ability to estimate burden levels
        for seasons based on historical data. It is aimed towards
        epidemiologists, public health professionals, and researchers
        seeking to identify and respond to seasonal epidemics in a
        timely fashion.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/ssi-dk/aedseo, https://ssi-dk.github.io/aedseo/
BugReports: https://github.com/ssi-dk/aedseo/issues
Depends: R (>= 4.2.0)
Suggests: grid, ISOweek, kableExtra, knitr, mem, rmarkdown, testthat
        (>= 3.0.0), withr
Config/testthat/edition: 3
Imports: base, checkmate, dplyr, ggplot2, lifecycle, lubridate, plyr,
        purrr, pracma, rlang, scales, stats, stringr, tibble, tidyr
Config/Needs/website: rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev
Repository: https://ssi-dk.r-universe.dev
Date/Publication: 2026-06-24 13:03:34 UTC
RemoteUrl: https://github.com/ssi-dk/aedseo
RemoteRef: HEAD
RemoteSha: ef8b7984d3c30cb4feaffd32e4fd229ce294c3a5
NeedsCompilation: no
Packaged: 2026-06-24 13:29:32 UTC; root
Author: Sofia Myrup Otero [aut] (ORCID:
    <https://orcid.org/0009-0006-4953-614X>),
  Kasper Schou Telkamp [aut] (ORCID:
    <https://orcid.org/0009-0001-5126-0190>),
  Lasse Engbo Christiansen [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5019-1931>),
  Rasmus Skytte Randløv [rev] (ORCID:
    <https://orcid.org/0000-0002-5860-3838>),
  Statens Serum Institut, SSI [cph, fnd]
Maintainer: Lasse Engbo Christiansen <lsec@ssi.dk>