Package: aedseo 0.1.2.9000
Lasse Engbo Christiansen
aedseo: Automated and Early Detection of Seasonal Epidemic Onset
A powerful tool for automating the early detection of seasonal epidemic onsets in time series data. It offers the ability to estimate growth rates for consecutive time intervals and calculate the sum of cases (SoC) within those intervals. It is particularly useful for epidemiologists, public health professionals, and researchers seeking to identify and respond to seasonal epidemics in a timely fashion. For reference on growth rate estimation, see Walling and Lipstich (2007) <doi:10.1098/rspb.2006.3754> and Obadia et al. (2012) <doi:10.1186/1472-6947-12-147>.
Authors:
aedseo_0.1.2.9000.tar.gz
aedseo_0.1.2.9000.zip(r-4.5)aedseo_0.1.2.9000.zip(r-4.4)aedseo_0.1.2.9000.zip(r-4.3)
aedseo_0.1.2.9000.tgz(r-4.4-any)aedseo_0.1.2.9000.tgz(r-4.3-any)
aedseo_0.1.2.9000.tar.gz(r-4.5-noble)aedseo_0.1.2.9000.tar.gz(r-4.4-noble)
aedseo_0.1.2.9000.tgz(r-4.4-emscripten)aedseo_0.1.2.9000.tgz(r-4.3-emscripten)
aedseo.pdf |aedseo.html✨
aedseo/json (API)
NEWS
| # Install 'aedseo' in R: |
| install.packages('aedseo', repos = c('https://ssi-dk.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ssi-dk/aedseo/issues
Last updated 10 months agofrom:8336df0476. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 12 2024 |
| R-4.5-win | OK | Sep 12 2024 |
| R-4.5-linux | OK | Sep 12 2024 |
| R-4.4-win | OK | Sep 12 2024 |
| R-4.4-mac | OK | Sep 12 2024 |
| R-4.3-win | OK | Sep 12 2024 |
| R-4.3-mac | OK | Sep 12 2024 |
Exports:%>%aedseoautoplotepi_calendarfit_growth_ratetsd
Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalestibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Automated and Early Detection of Seasonal Epidemic Onset | aedseo |
| Create a complete 'ggplot' appropriate to a particular data type | autoplot autoplot.aedseo autoplot.aedseo_tsd |
| Determine Epidemiological Season | epi_calendar |
| Fit a growth rate model to time series observations. | fit_growth_rate |
| Create a complete 'ggplot' appropriate to a particular data type | plot plot.aedseo plot.aedseo_tsd |
| Predict Growth Rates for Future Time Steps | predict.aedseo |
| Summary method for aedseo objects | summary.aedseo |
| Create a S3 'aedseo_tsd' (time-series data) object from observed data and corresponding dates. | tsd |